ATP & NADPH
Thylakoid Membrane
Yeast
Some bacteria and mammal muscle
2 Acetyl CoA
Carbon Dioxide & Water
Polar Molecules Hydrogen bond with water
Organic Molecules and Oxygen
ADP, inorganic phosphate, & NADP+

Biology 311C Concept Map

Chemical Bonding & Organic Compounds

Types Of Bonds

Ionic

Covalent

Metallic

Electronegativity

Similar negativity

Nonpolar

Hydrophobic

Van Der Waals

Diff. Electronegativity

Polar

Dipole-Dipole

Ion-Dipole

Acidic

Basic

Carbon Skeletons

Isomers

Structural

Enantiomers

Geometric

Cis-Tran

Functional Groups

Hydroxyl

Carbonyl

Carboxyl

Amino

Sulfuhydryl

Phosphate

Methyl

Chemical Evolution/Prokaryotes

Reduced atmosphere

Oparin's Bubble

Milley & Urey

Eukaryotic Cell

Plant Cell

Chloroplast

Central Vacuole

Tonoplast

Cytoplasmic Streaming

Animal Cell

Phagocytosis

Macrophages

Pinocytosis

Intercelluar Junctions

Gap, tight, cell membrane

Plasmodesmata

Nucleus

Lysosome

Golgi apparatus

Endoplasmic Reticulum

Rough

Smooth

Cytosol

Ribosomes

Protein Synthesis

Cytoskeleton

Microtubules

Microfilaments

Intermediate Filaments

Lymphocytes

T cells

B cells

Antibodies

Cellular Respiration

Cytosol

Glycolysis

4 ATP, 2 NADH, and 2 Pyruvate Produced

Oxygen

Mitochondria

Pyruvate Oxidation

Citric Acid Cycle

3 NADH, 1 FADH2, 1 ATP

Oxidative Phosphorylation

Electron Transport and Chemiosmosis

No Oxygen

Fermentation

2 Lactid Acid

2 Ethanol + 2 CO2

Dna Structure & Replication

Cell

Nucleus

Chromosome

Gene

mRNA

Protein

Gene Expression

Transcription

5' to 3'

Initiation

Elongation

Termination

RNA polymerase

RNA processing

Introns

Exons

Splicing

Phosphodiester Bonds

Alternate Splicing

Translation

mRNA

tRNA

Ribosomes

Proteins

mRNA

Binding Sites for tRNA

P Site

A Site

E Site

Amino Acids

Initiation Factors

Fmet in prokaryotes

Cap at 5' end in Eukaryotes

Amino acyl tRNA synthatase

Peptidyl transferase

Bacteriophages

DNA

Mutations

Silent

Missense

Nonsense

Frame Shift

Reading Frame

Protein

Griffith

Avery, McCleod, McCarty

DNA

Chargaff's Rule

Base Pairing

Double Stranded

Replication Bubble

ORI

Replication Fork

Lagging & Leading Strands

Okazaki Fragments

helicase

Models of DNA Replication

Semiconservative

Conservative

Dispersive

Messleson And Stahl

Polymerase Chain Reaction

RNA

Protein Synthesis

Free Ribosomes

Rough ER

Golgi

Lysosomes

Plasma Membrane

Secretion

Exocytosis

Stay in Golgi

Organelles

Glycoprotein

Protein Sorting

Photosynthesis

Light

Light Reactions

Photosystem II

ETC

Photosystem I

ETC

ATP & NADPH

Calvin cycle

Carbon Dioxide

Sugar G3P

Macromolecules

Carbohydrates

Proteins

Nucleic acids

Lipids

monosaccharides

polysaccharides

glucose

amino acids

nucleotides

starch

glycogen

cellulose

alpha glucose

beta glucose

steroids

cholesterol

testosterone

HDL

LDL

saturated fat

unsaturated fat

trans fat

phospholipids

adenine

thymine

cytosine

guanine

RNA

DNA

uracil

Cell Membranes

Membrane Proteins

transport protein

enzyme

signal transduction

cell-cell recognition

intercellular joining

Diffusion

simple diffusion

facilitated diffusion

membrane transport

active transport

osmotic conditions

hypertonic

hypotonic

isotonic

normal (animal)

flaccid (plant)

shriveled (animal)

plazmolyzed (plant)

lysed (animal)

turgid/normal (plant)

sodium potassium pump

cell communication

local signaling

long distance signaling

hydrophobic signal molecule

hydrophilic signal molecule

receptor in cell

cytoplasm

nucleus

receptor on cell membrane

G protein receptor

tyrosine kinase receptor

ion channel receptor

signal molecule binds receptor

G protein activated by GTP

G protein binds inactive
enzyme (adenylyl cyclase)

signal molecule binds

forms dimer

uses ATP to get phosphorylated

relay proteins bind to dimer,
get activated

produces 2 cellular responses

ligand binds to ion channel receptor

gate opens

cellular response

ligand leaves

gate closes

converts ATP to
cAMP (secondary receptor)

cAMP activates protein kinase A

phosphorylation cascade

cellular responses

cell signaling

synapses

electrical

chemical

Cell Cycle and Regulation

karyotype

chromosomes

allele

centromere

sister chromatids

homologous

somatic cells

germ cells

meiosis

mitosis

diploid

haploid

phases of cell cycle

interphase

G1

G2

S (DNA synthesis)

single chromatid chromosome

duplication

prophase

prometaphase

metaphase

anaphase

telophase

cytokinesis

cleavage furrow (animal)

cell plate (plant)

produces gametes

22 autosomes

1 sex chromosome

meiosis 1

meiosis 2

same as mitosis

start with homologous
chromosome pair

start with replicated
chromosome

has a checkpoint

Water

Properties of Water

Cling to Polar Molecules

High Specific Heat

Hydrogen Bonding

High Heat of Vaporization

Universal Solvent

Amphipathic Molecules

Non Polar Molecule Behavior

Floating topic