Nucleic Acid Research Database (NAR DATABASE)

Nucleotide Sequence Database

International Nucleotide Sequence Database Collaboration

MICdb - Database of Prokaryotic Microsatellites

Coding and non-coding DNA

EID: Exon-Intron Database

RNA Sequence Database

European rRNA database

Protein Database

General sequence databases

CharProtDB

Protein properties

BindingDB

Protein localization and targeting

eSLDB - eukaryotic Subcellular Localization database

Protein sequence motifs and active sites

ASC - Active Sequence Collection

Protein domain databases; protein classification

3DSwap: Database of Proteins involved in 3D domain Swapping

Databases of individual protein families

RPG - Ribosomal Protein Gene database

Structure Database

Carbohydrates

CSS - Carbohydrate Structure Suite

Nucleic acid structure

NCIR - Non-Canonical Interactions in RNA

Protein structure

DisProt - Database of Protein Disorder

Genomic Database

Genome annotation terms, ontologies and nomenclature

SOURCE

UniProtKB - Gene Ontology Annotation

Taxonomy and identification

NCBI Taxonomy

General genomics databases

GtRDB - Genomic tRNA Database

Invertebrate genome databases

WorfDB - Worm ORF Database

Metabolic and Signalling Pathway

Enzymes and enzyme nomenclature

BRENDA

Metabolic pathways

KEGG - Kyoto Encyclopedia of Genes and Genomes

Protein-protein interactions

DDIB - Database of Domain Interactions and Binding

Signalling pathways

UCSD-Nature Signaling Gateway Molecule Pages

Human and Other Veterbrate Genome

Human genome databases, maps and viewers

The UCSC Genome Browser database

Human ORFs

Human Proteinpedia

Human Gene and Disease

General human genetics databases

GenAtlas

General polymorphism databases

IPD - Immuno Polymorphism Database

Cancer gene databases

Network of Cancer Genes

Proteomic Database

Open Proteomics Database

Microarray Data and Other Gene Expression Database

Stanford Microarray Database

Other molecular Database

Drugs and drug design

BSD - Biodegradative Strain Database

Molecular probes and primers

Human OligoGenome Resource

Organelle Database

Mitochondrial genes and proteins

HmtDB - Human Mitochondrial DataBase

Plant Database

General plant databases

PPDB: Plant Proteomics Database

Other plants

ForestTreeDB

Immunological Database

The Immune Epitope Database (IEDB)

AntigenDB

Cell Biology

NCBI Bookshelf

1552 online database sorted into 14 categories and 41 subcategories

58 new molecular biology databases

Updates of 100 database previously featured in NAR

Updated descriptions of 23 database that had been previously describe in other journal

The 21st annual Nucleic Acid Research Database issue include 185 articles

Description of database resources

National Center for Biotechnology Information (NCBI)

European Bioinfomatics Institute (EBI)

US Department of Energy Joint Genome Institutes (JGI)

UniProt

Resources of protein sequences and contain large amount of biological functional information of proteins.

NCBI Protein database

Sequences collections, contains proteins translation from annotated coding regions where has ability to determine bioogical structure and functions.

Protein Data Bank (PDB)

3-Dimensional structural data of large biological molecules

Database that contains biomolecular structure and protein domain ( structural data of macromolecules)

Structural Classification of Proteins (SCOPe)

Comprehensive description of proteins structural, proteins folds, superfamilies and families statistics.

Contains proteins structural domains based on similarities of structures and amino acid sequences

SWISS-MODEL Repository

a database of annotated 3-dimensional comparative proteins structure model generated by automated homology-modelling pipeline Swiss-model

BRENDA

Database of enzyme information system representing one of the most comprehensive enzyme repositories

InterPro

Database that consist of proteins sequences and analysis.

Database that consisit of protein families, domains and functional sites proteins can be applied to new protein sequences.