lead to
Result in

Chemical Bonds

Ionic Bond

r

Transfer of electrons between oppositely charged ironsCan lead to ion-dipole interactions in water

Ion-dipole interactions in water

Covalent Bond

r

Two atoms share one or more pairs of electrons to achieve stability.

Structure and Function of Cells

Prokaryotic Cells

Archaea

Circular chromosome

r

stores genetic information 

Cytoplasm

r

gel like substance that fills the cell and and keeps the organelles in place

Bacteria

Plama Membrane

r

selectively permeable barrier, mechanical boundary of cell, nutrient and waste transport, location of many metabolic processes (respiration and photosynthesis), detection of environmental cues for chemotaxis

Gas Vacuole

r

buoyancy for floating in aquatic environments

Ribosomes

r

protein synthesis

Inclusion bodies

r

storage of carbon, phosphate, and other substances 

Nucleoid

r

localization of genetic material (DNA)

Periplasmic Space

r

contains hydrolytic enzymes and binding proteins to nutrient processing and uptake

Cell wall

r

Gives bacteria shape and protection from lysis in dilute solutions

Capsules

r

resistance to phagocytosis

- slime layers

r

adherence to surfaces 

Fimbriae

r

 attachment to surfaces

Pili

r

bacterial mating 

Flagella

r

movement

Endospore

r

survival under harsh environmental conditions  

Eukaryotic Cells

Animal

proteoglycan

r

found in the ECM, proteoglycan are  proteins with sugars attached, involved in organizing extracellular matrix

Extracellular matrix

r

located outside the membrane, this  structure has many parts: fibronectin, proteoglycan (animal cell ECM), and collagen. Changes in this structure can trigger processes inside the cell

Desmosomes

r

 structure connects cells together that are semi-sealed. Desmosomes use proteins and are programed to selectively allow materials

Tight junctions

r

secure cells very tightly, keeps stuff from freely moving around 

Gap junctions

r

structures that connect cells, things can pass through very easily

Plants

Cell wall

r

 located outside the cell membrane, made of cellulose, and helps maintain cell shape

Chloroplast

r

double membrane organelle that has its own DNA and performs photosynthesis

Central Vacuole

r

stores water, nutrients, and waste  

Plasmodesmata

r

channels  found in plant cells that allow for the movement of water and other materials to move between cells

Plastids

r

 store food and make pigment 

Both

Nuclear Envelope

r

double membrane enclosing the nucleus; performed by pores; continuous with ER, also known as the nuclear lamina 

Nucleolus

r

non membranous structure involved in production of ribosomes; a nucleus has one or more nucleoli 

Chromatin

r

 material consisting of DNA and protein; visible in a dividing cell as individual condensed chromosomes 

Plasma membrane

r

 membrane enclosing the cell

Ribosomes

r

complexes that make proteins; free in cytosol or bound to rough ER or nuclear envelope 

Golgi apparatus

r

organelle active in synthesis, modification, sorting, and secretion/transportation of cell products

Lysosomes

r

digestive organelle where biomolecules are broken down, hydrolysis reaction 

Mitochondria

r

 organelle where cellular respiration occurs and most ATP is generated 

Peroxisome

r

organelle with various specialized metabolic functions; produces hydrogen peroxide as a by product and then converts it to water  

Microvilli

r

projections that increase the cells surface area 

Cytoskeleton

r

reinforces cell shape; functions in cell movement; components are made of protein, includes…

Microfilaments

r

made of actin, helps maintain cell shape but also aid with movement 

Intermediate filament

r

in the middle, anchor organelles to the cell and help maintain a cell’s shape, composed of keratin proteins.

Microtubules

r

made of tubulin, this hollow shape maintains the shape of the cell. very structural and moves organelles 

Rough ER

r

composed of ribosomes that perform protein synthesis

Smooth ER

r

attached to nucleus synthesizes lipids (can also help detoxify) 

Vesicles

r

Vehicle of the cell,  the golgi apparatus packages things into vesicles where vesicles can then transport cellular materials.

Cytoplasm

r

gel like substance that fills the cell and and keeps the organelles in place

Nonpolar

r

Sharing of electrons between two atoms with an EN difference of less than 0.5

Van Der Waals

Hydrophobic Interactions

Polar

r

Sharing of electrons between two atoms with an EN difference of 0.5 or greater

Examples in Biological Molecules

Peptide bond

Phosphodiester bond

Glycosylic linkage

Ester bond

Partially Charged Atoms

Hydrogen Bond

Water Properties

Cohesive behavior

High Specific Heat

High Heat of Vaporization

Denser as liquid than solid

Universal Solvent

Dipole-dipole Interaction

Biological Molecules

Nucleic acids

RNA

r

Unlike DNA, RNA has oxygen

G/C and A/U

DNA

r

DNA provides directions for its own replicationDNA directs the synthesis of messenger RNA (mRNA), and through mRNA, DNA can control protein synthesis, this process is known as gene expressionDNA is double helix polymerDeoxyribose (DNA)--> no oxygen

G/C and A/T

H-bonding through complitary base pairing forms DNA double helix

Nucleotides

r

Nucleic acids are polymers made of monomers-- called nucleotides

Nitrogenous base

phosphate group

Phosphodiester link connects phosphites and sugars

5 carbon sugar

Lipids

r

NOTE: LIPIDS ARE NOT POLYMERS!A process of dehydration occurs to make a fat molecule.Heating can change the chemical composition of an oil/fat. Repeated heating and cooling cycles can denature and change the composition of double bonds. However, only a fraction of fats are effected though.

Saturated

solid at room temperature

"saturated with Hydrogen"

Hydrophobic

Unsaturated

Liquid at room temperature

Double bonded carbon

Trans fats

removing double C bond and adding Hydrogen to convert cis to trans fat, however this incomplete formation of unsaturated to saturated fat is what leads to trans fat.

Carbohydrates

r

Carbohydrates serve as fuel and building materials

Isomers

Geometric Isomers

Enantiomers

Structural Isomers

Types of polysaccharides

structure

cellulose

storage

glycogen

starch

Beta Glucose

Alpha Glucose

Protiens

R groups

Polar

Non-polar

Acidic

Basic

Protein folding

Primary

Secodary

Alpha Helices

Beta pleated sheets

Tertiary

Quarternary

Functional groups

Carbonyl group (>C=O)

Hydroxyl Group (-OH)

Carboxyl Group (-COOH)

Amino Group (-NH2)

Sulfhydryl Group (-SH)

Phosphate Group (-OPO3^2-)

Methyl Group (-CH3)