Membranes, Energy, and Cell Communication
Production of ATP using organic molecules through cell respiration.
Cellular Respiration
Glycosis
Location: Cytosol
Order of Events
Input: 1 Glucose, 2 ATP
Energy Investment Phase
Step 1
Hexokinase transfers a phosphate group from ATP to glucose
Step 2
Glucose - 6 phosphate us converted to frutose 6 phosphate
Step 3
Phosphofructokinase transfers a phosphate group from ATP to the opposite side of the sugar, investing a ATP.
Step 4
Aldolase cleaves the sugar molecule into 2 difference (3) carbon sugars
Step 5
Conversion between DHAP and G3P
Energy Payoff Phase
Step 6
G3P is oxidized by the transfers of electrons to NAD+, creating NADH
Energy from the exergonic reaction is used to attach a phosphate group to the oxidized substrate.
Step 7
The phosphate group is transferred to ADP, to form ATP and 3-phosphoglycerate
Step 8
The enzyme relocates the remaining phosphate group
Step 9
The enolase removes a water molecule from 2-phosphoglycerate, yielding phosphoenolpyruvate.
Step 10
The phosphate group is transferred from PEP to ADP forming pyruvate
Pyruvate Oxidation
Location: Initial - Cytosol; Final - Mitochondria Matrix
Order of Events
Input: 2 Pyruvate
A carboxyl group is removed from pyruvate, NAH+ is reduced, then a acetyl groups is transferred to coenzyme A.
Output: 2 Acetyl CoA, 2 NADH
Citric Acid Cycle
Location: Mitochondrial Matrix
Input: 2 Acetyl CoA
Order of Events
Step 1
The Acetyle CoA+Oxaloacetate from Citrate.
Step 2
Isocitrate is oxidized, NAD+ is reduced
Step 3
Once CO2 is released, the 4 carbon molecule is oxidized, then reactive due to additional CoA
Step 5
ATP formation
Step 4
Succinate is oxidized, FAD is reduced.
Step 6
Malate is Oxidizde, NAD+ is reduced
Oxidative Phosphorylation
Location: Mitocondria
Electron Transport Chain
The electrons go through the chain higher to lower energy levels.
The energy released in the ETC is then used as a proton gradient,
Chemiosmosis
Transporting of Proton through channels in the membrane of mitochondria from the inner and outer compartments.
The constructing of a proton (H+) gradient
Protons diffuse down the gradient though a protein
Coupled to ATP Synthase
Comparison
Mitochondrion Structure
Intermembrane Space
Inner Membrane
Matrix
Chloroplast Strucutre
Thylakoid Space
Thylakoid Membrane
Stroma
components of membranes
phospholipid bilayer
membrane fluidity
temperature
types of fatty acids present
presence of cholesterol in animal cells
mosaic plasma membrane
two different types of proteins present in membranes
peripheral
integral
transmembrane proteins/ transport proteins
selective permeability
aquaporin
passive transport
facilitated diffusion
channel proteins
carrier proteins
diffusion
osmosis
water balance in cells
tonicity
isotonic
hypertonic
hypotonic
active transport
NA+/ K+ pump
types of electrogenic pump
proton pumps
cotransport
bulk transport
exocytosis
endocytosis
membrane potential
ion channels
ungated
gated
Energy transfers and transformations in cells
Cell Signaling
Gfinalstate – G initialstate or Gproducts – G reactants
Gibbs Free energy
G < 0
G = 0
G > 0
Fermentation
Lactic Acid Fermentation
A process in which sugars are converted into cellular energy in which lactic acids is a part of the solution.
Alcohol Fermentation
Converts sugars into cellular energy producing ethanol and carbon dioxide as by products.
Becoming Oxidized
Becoming Reduced
Creation of ATP
Substrate level phosphorylation
Output: 2 Pyruvate, 2 NADH, 4 ATP
Output: 6 NADH, 2 FADH, 2 ATP
Photosystems
Photosystem 1
The reaction - center chlorophyll 'a' absorbs at 700 nm
Photosystem 2
The reaction - center chlorophyll 'a' absorbs at 680 nm
Flow of Electrons
Non-Cyclic
Aerobic Conditions
Produces NADPH in addition to ATP
Facilitates the synthesis of organi moelcules and extended storage of energy
Cyclic
Anaerobic Conditions
Synthesis of ATP
formation of glutamine (amino acid)
this reaction is coupled with ATP hydrolysis,
Pi formed is added to one of the reactants glutamic acid
makes it unstable (high free energy).
its attempt to be more stable reacts with ammonia to form glutamine and the Pi group is released in the process
Coupling is favored
Chemical reactions powered by ATP
Energy coupler in cells:cellular work
Both endergonic and exergonic reactions occur in cells
couple these two by using coupling agents like ATP
ATP
Transport work
ATP phosphorylates transport proteins
Mechanical work
ATP binds noncovalently to motor proteins and then is hydrolyzed
The ATP Cycle
ATP is a renewable resource that is regenerated by addition of a phosphate group to ADP. The energy to phosphorylate ADP comes from catabolic reactions in the cell.
Enzymes
enzymes lower the energy of activation barrier: exergonic reaction to change in the presence of enzyme
Environmental Factors Affecting Enzyme Activity
Temperature
rate or speed of a reaction increases with increase in temperature
pH
cell’s neutral pH is 7.2 and this is where most enzymes function, there are some exceptions as seen here.
Enzyme Regulation
Inhibition of Enzyme Activity
Competitive inhibition
Noncompetitive inhibition
Allosteric regulation
Regulatory molecule: Inhibitor or Activator
Cooperativity
Allosteric Regulation
local signaling - exchanging of signals within close proximity
paracrine or synaptic
long distance signaling - if the cell is releasing the signal from a far distance to a receptor
use
Active transport
From low concentration to high concentration
Requires energy
Needed protein to transfer molecules
Pumps
NA+/K+ pump
Contractile Vacuole
Protien=ATD
Endocytosis
eat outside cells through membrane
Exocytosis
Some inside cells are gotten rid out membrane
Cells communicate using rather physical contact or releasing a signal to a target cell
signal molecule/ligand and a receptor
Signal Transduction
Stage 1: Reception
Stage 2: Transduction
Stage 3: Response
How does a signal work using cAMP?
Messenger binds to GPCR to activate it
|
Activated GPCR binds to G protein then binds to GTP which activates G protein
|
Activated G protein/GTP binds to adenylyl cyclase, GTP is hydrolyzed which activates adenylyl cyclase
|
Activated adenylyl cyclase converts ATP to cAMP
|
cAMP, a second messenger activates another protein leading to a cellular response
Energy transfer and
transformation is critical to
all aspects of biology from
cells to ecosystems
Forms of Energy
Kinetic energy
Thermal energy
Kinetic energy of molecular motion
Light energy
Kinetic energy of movement of photons
Potential energy
Stored Energy
Happens Because of position, location, or arrangement
chemical energy stored in molecular structure
Potential energy in foods is chemical energy
Electron in outer shell - more potential energy
these pumps help maintain membrane potential
2. depolarization
generation of action potential
5. undershoot
1. resting state
3. rising phase
4. falling phase/ repolarization
Metabolism
Metabolic pathway
Catbolic Pathway
Pathways that release energy by breaking down complex molecules into simpler compounds
Celular resperation
C6H12O6+6O2->H2O + Energy
a complex molecule like glucose is broken down to carbon dioxide and water with the release of energy.
Anabolic Pathway
Pathways that consume energy to build larger, complicated molecules from simpler ones
Biosynthetic pathways
Polymerization
Photosynthesis 6CO2 +6H20 + light-> C6H1206 + 6O2
animal cells
plant cells
Thermodynamics
1st Law
Energy can be transferred and transformed, but it cannot be created or destroyed
2nd Law
Every energy transfer or transformation increases the entropy of the universe
Free energy
Spontaneous Reaction
Only reactions with a negative ΔG are spontaneous, which means they occur with no net input of energy.
Spontaneous reactions can be harnessed to perform cellular work
Non-Spontaneous Reaction
a reaction that does not favor the formation of products at the given set of conditions. In order for a reaction to be nonspontaneous, it must be endothermic,
Energy Changes
Chemical Reactions
Exergonic
energy released, spontaneous
The Overall delta G is negative
Endergonic
Energy required, nonspontaneous
products have more energy than the reactants
Delta G is positive