opening of ion channels causes depolarization
The agent in which gains electrons
Process of Cell Respiration
normal/ turgid
The agent in which causes another molecule to gain electrons
Coupled together
normal
allow for passage of hydrophilic substance across the membrane

Membranes, Energy, and Cell Communication

Production of ATP using organic molecules through cell respiration.

Cellular Respiration

Glycosis

Location: Cytosol

Order of Events

Input: 1 Glucose, 2 ATP

Energy Investment Phase

Step 1

Hexokinase transfers a phosphate group from ATP to glucose

Step 2

Glucose - 6 phosphate us converted to frutose 6 phosphate

Step 3

Phosphofructokinase transfers a phosphate group from ATP to the opposite side of the sugar, investing a ATP.

Step 4

Aldolase cleaves the sugar molecule into 2 difference (3) carbon sugars

Step 5

Conversion between DHAP and G3P

Energy Payoff Phase

Step 6

G3P is oxidized by the transfers of electrons to NAD+, creating NADH

Energy from the exergonic reaction is used to attach a phosphate group to the oxidized substrate.

Step 7

The phosphate group is transferred to ADP, to form ATP and 3-phosphoglycerate

Step 8

The enzyme relocates the remaining phosphate group

Step 9

The enolase removes a water molecule from 2-phosphoglycerate, yielding phosphoenolpyruvate.

Step 10

The phosphate group is transferred from PEP to ADP forming pyruvate

Pyruvate Oxidation

Location: Initial - Cytosol; Final - Mitochondria Matrix

Order of Events

Input: 2 Pyruvate

A carboxyl group is removed from pyruvate, NAH+ is reduced, then a acetyl groups is transferred to coenzyme A.

Output: 2 Acetyl CoA, 2 NADH

Citric Acid Cycle

Location: Mitochondrial Matrix

Input: 2 Acetyl CoA

Order of Events

Step 1

The Acetyle CoA+Oxaloacetate from Citrate.

Step 2

Isocitrate is oxidized, NAD+ is reduced

Step 3

Once CO2 is released, the 4 carbon molecule is oxidized, then reactive due to additional CoA

Step 5

ATP formation

Step 4

Succinate is oxidized, FAD is reduced.

Step 6

Malate is Oxidizde, NAD+ is reduced

Oxidative Phosphorylation

Location: Mitocondria

Electron Transport Chain

The electrons go through the chain higher to lower energy levels.

The energy released in the ETC is then used as a proton gradient,

Chemiosmosis

Transporting of Proton through channels in the membrane of mitochondria from the inner and outer compartments.

The constructing of a proton (H+) gradient

Protons diffuse down the gradient though a protein

Coupled to ATP Synthase

Comparison

Mitochondrion Structure

Intermembrane Space

Inner Membrane

Matrix

Chloroplast Strucutre

Thylakoid Space

Thylakoid Membrane

Stroma

components of membranes

phospholipid bilayer

membrane fluidity

temperature

r

each phospholipid has a specific phase transition temperature; above this temperature, the lipid is in liquid crystalline phase and fluid; below this temperature, the lipid is in a gel phase and is rigid

types of fatty acids present

r

unsaturated fatty acids provide a bend in the structure of the phospholipid bilayer, allowing for more fluidity; the presence of unsaturated fatty acids also helps the membrane withstand low temperatures

presence of cholesterol in animal cells

r

the presence of cholesterol regulates the movement of phospholipids in membranes; at moderate temperatures it helps to reduce movement while in low temperatures, it prevents packing between phospholipids

mosaic plasma membrane

two different types of proteins present in membranes

peripheral

r

Peripheral proteins are anchored to the membrane

integral

r

Integral proteins are partially or fully inserted into the membrane. If they are fully inserted than they are called transmembrane proteins.

transmembrane proteins/ transport proteins

selective permeability

r

A cell has to regulate transport of substances across the cellular membrane. This is important because it helps manage and separate different materials traveling throughout the cell. Small nonpolar molecules and small uncharged polar molecules have higher permeability and can travel through the bilayer. Large uncharged polar molecules and ions have low permeability and cannot pass through the membrane on its own.

aquaporin

r

Aquaporin are types of proteins that aid in the transport of water across membranes.

passive transport

r

Passive transport is a movement across a membrane that does not require any energy. It is moving down the concentration gradient, from an area of high concentration to low concentration.

facilitated diffusion

r

Facilitated diffusion is passive transport aided by proteins. They help move hydrophilic substances across membranes as they cannot diffuse on their own.

channel proteins

r

Channel proteins provide channels that allow a specific molecule or ion to cross the membrane.

carrier proteins

r

Carrier proteins undergo subtle changes that help transport proteins from on side to another. Sort of like an elevator, it takes in a few molecules at a time, closes, and opens up on the other side.

diffusion

r

Diffusion is the tendency for molecules to spread out evenly into available space. They always move from areas of high concentration to low concentration.

osmosis

r

Osmosis is the diffusion of water across a selectively permeable membrane. Water diffuses from an area of lower solute concentration to an area of higher solute concentration until the concentrations are equal on both sides.

water balance in cells

tonicity

r

tonicity is the ability of a surrounding solution to cause a cell to gain or lose water

isotonic

r

solute concentration is the same as inside the cell; no net water movement

hypertonic

r

solute concentration is greater than inside the cell with respect to the cell/solute concentration is greater than that outside of the cell with respect to the environment

hypotonic

r

solute concentration is less than that inside the cell with respect to the cell/ solute concentration is less than that outside of the cell with respect to the environment

active transport

r

Active transport moves substances from low to high concentration, against concentration gradients, requiring energy (ATP).

NA+/ K+ pump

r

The sodium potassium pump aids in the transport of sodium and potassium ions in a cell. There is usually in abundance of sodium outside the cell and abundance of potassium inside the cell. 3 Na+ are transported out of the cell for every 2 K+ ions transported in.

types of electrogenic pump

r

Electrogenic pumps are proteins that generate voltage across a membrane. These also help store energy used for cellular work.

proton pumps

r

A positive charge leaves the cell, and a slight negative charge develops inside the cell and a positive charge outside the membrane.

cotransport

r

Cotransport occurs when active transport of a solute indirectly drives transport of other substances. For example, plant cells use the H+ generated from proton pumps to drive active transport of nutrients into the cell.

bulk transport

r

Large molecules cross the membrane in bulk in vesicles.

exocytosis

r

Transport vesicles move towards the membrane, fuse with it and release their contents. Exocytosis is used to export products.

endocytosis

r

Endocytosis takes in molecules. There are three types: phagocytosis, pinocytosis, receptor-mediated endocytosisphagocytosis takes in large food particles/ other cells by extending its membrane outpinocytosis takes in extracellular fluid from outside in vesiclesreceptor mediated endocytosis is a specialized type of pinocytosis that allows for the cell to acquire bulk quantities of specific substances even if they may not be concentrated in the extracellular fluid

membrane potential

r

Membrane potential is the amount of voltage in the cell. When there is no net movement of certain ions across the membrane then equilibrium potential is reached.

ion channels

r

Ion channels are membrane proteins that allow for transport of ions across membranes. They are always open but can be closed at times. This would depend on the voltages within the membrane.

ungated

r

Ion channels are always open and allow for ions to move through.

gated

r

Ion channels are able to open and close in response to stimuli.stretch gated - open when membrane is deformedligand gated - open and close when a neurotransmitter binds to channelvoltage gated - open and close in response to changes in membrane potential

Energy transfers and transformations in cells

e1FE

Cell Signaling

Gfinalstate – G initialstate or Gproducts – G reactants

Gibbs Free energy

G < 0

c1

G = 0

c1

G > 0

c1

Fermentation

Lactic Acid Fermentation

A process in which sugars are converted into cellular energy in which lactic acids is a part of the solution.

Alcohol Fermentation

Converts sugars into cellular energy producing ethanol and carbon dioxide as by products.

r

solute concentration is less than that inside the cell with respect to the cell/ solute concentration is less than that outside of the cell with respect to the environment

Becoming Oxidized

Becoming Reduced

Creation of ATP

Substrate level phosphorylation

Output: 2 Pyruvate, 2 NADH, 4 ATP

Output: 6 NADH, 2 FADH, 2 ATP

Photosystems

Photosystem 1

The reaction - center chlorophyll 'a' absorbs at 700 nm

Photosystem 2

The reaction - center chlorophyll 'a' absorbs at 680 nm

Flow of Electrons

Non-Cyclic

Aerobic Conditions

Produces NADPH in addition to ATP

Facilitates the synthesis of organi moelcules and extended storage of energy

Cyclic

Anaerobic Conditions

Synthesis of ATP

formation of glutamine (amino acid)

this reaction is coupled with ATP hydrolysis,

Pi formed is added to one of the reactants glutamic acid

makes it unstable (high free energy).

its attempt to be more stable reacts with ammonia to form glutamine and the Pi group is released in the process

Coupling is favored

Chemical reactions powered by ATP

Energy coupler in cells:cellular work

Both endergonic and exergonic reactions occur in cells

couple these two by using coupling agents like ATP

ATP

c1

Transport work

ATP phosphorylates transport proteins

Mechanical work

ATP binds noncovalently to motor proteins and then is hydrolyzed

The ATP Cycle

c1

ATP is a renewable resource that is regenerated by addition of a phosphate group to ADP. The energy to phosphorylate ADP comes from catabolic reactions in the cell.

Enzymes

enzymes lower the energy of activation barrier: exergonic reaction to change in the presence of enzyme

c1

Environmental Factors Affecting Enzyme Activity

Temperature

rate or speed of a reaction increases with increase in temperature

pH

cell’s neutral pH is 7.2 and this is where most enzymes function, there are some exceptions as seen here.

Enzyme Regulation

Inhibition of Enzyme Activity

Competitive inhibition

c1

Noncompetitive inhibition

c1

Allosteric regulation

Regulatory molecule: Inhibitor or Activator

c1

Cooperativity

c1

Allosteric Regulation

c1

local signaling - exchanging of signals within close proximity

paracrine or synaptic

long distance signaling - if the cell is releasing the signal from a far distance to a receptor

use

Active transport

From low concentration to high concentration

Requires energy

Needed protein to transfer molecules

Pumps

NA+/K+ pump

Contractile Vacuole

Protien=ATD

Endocytosis

eat outside cells through membrane

Exocytosis

Some inside cells are gotten rid out membrane

Cells communicate using rather physical contact or releasing a signal to a target cell

FE

signal molecule/ligand and a receptor

Signal Transduction

Stage 1: Reception
Stage 2: Transduction
Stage 3: Response

How does a signal work using cAMP?

Messenger binds to GPCR to activate it
|
Activated GPCR binds to G protein then binds to GTP which activates G protein
|
Activated G protein/GTP binds to adenylyl cyclase, GTP is hydrolyzed which activates adenylyl cyclase
|
Activated adenylyl cyclase converts ATP to cAMP
|
cAMP, a second messenger activates another protein leading to a cellular response


Energy transfer and
transformation is critical to
all aspects of biology from
cells to ecosystems

Forms of Energy

Kinetic energy

c1

Thermal energy

Kinetic energy of molecular motion

Light energy

Kinetic energy of movement of photons

Potential energy

c1

Stored Energy

Happens Because of position, location, or arrangement

chemical energy stored in molecular structure

Potential energy in foods is chemical energy

Electron in outer shell - more potential energy

these pumps help maintain membrane potential

2. depolarization

r

Depolarization occurs when ion channels cause the inside of the cell to become less negative. It is a reduction in the magnitude of the membrane potential. This also triggers an action potential.

generation of action potential

5. undershoot

r

The K+ channels have to close up again and before this happens there is a slight overly negative charge in the cell before it is able to reach its resting state once again.

1. resting state

r

Most voltage gated Na+ and K+ channels are closed.

3. rising phase

r

The voltage begins to increase until it reaches action potential.

4. falling phase/ repolarization

r

The inside of the cell becomes negative again.

Metabolism

Metabolic pathway

Catbolic Pathway

c1

Pathways that release energy by breaking down complex molecules into simpler compounds

Celular resperation

c1

C6H12O6+6O2->H2O + Energy

a complex molecule like glucose is broken down to carbon dioxide and water with the release of energy.

Anabolic Pathway

c1

Pathways that consume energy to build larger, complicated molecules from simpler ones

Biosynthetic pathways

c1

Polymerization

c1

Photosynthesis 6CO2 +6H20 + light-> C6H1206 + 6O2

c1

animal cells

r

hypotonic - lysedisotonic - normalhypertonic - shriveled

plant cells

r

hypotonic - turgid/ normal (plants need a lot of water to survive)hypertonic - plasmolyzed (loss of water/ cell can die)isotonic - flaccid (not net movement of water and can cause plant to wilt)

Thermodynamics

c1

1st Law

Energy can be transferred and transformed, but it cannot be created or destroyed

2nd Law

Every energy transfer or transformation increases the entropy of the universe

Free energy

c1

Spontaneous Reaction

Only reactions with a negative ΔG are spontaneous, which means they occur with no net input of energy.
Spontaneous reactions can be harnessed to perform cellular work

Non-Spontaneous Reaction

a reaction that does not favor the formation of products at the given set of conditions. In order for a reaction to be nonspontaneous, it must be endothermic,

Energy Changes

Chemical Reactions

Exergonic

c1

energy released, spontaneous

The Overall delta G is negative

c1

Endergonic

c1

Energy required, nonspontaneous

products have more energy than the reactants

c1

Delta G is positive

Floating topic