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Prokaryotes - external structures

Certain bacterial inclusions are specialized structures essential for various cellular functions. Carboxysomes are enzyme-containing inclusions involved in carbon dioxide fixation during photosynthesis and are found in nitrifying bacteria, cyanobacteria, and thiobacilli.

Prokaryotes - external structures

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Endospores

• cannot be destroyed easily, even by harsh chemicals. • are formed internal to the bacterial cell membrane • Highly resistant differentiated bacterial cell • Enable the organism to endure extreme environmental conditions • Endospore formation leads to a highly dehydrated structure thick walls and additional layers • Contain essential macromolecules and a variety of substances absent from vegetative cells
Spores are very impermeable to dye. However, they can be stained with special dye, Malachite green
genus Bacillus and Clostridium are two common disease causing bacteria that produce endospores as needed
• Bacillus anthracis • Clostridium tetani • Clostridium botulinum • Clostridium perfringens.
– resting structures formed by some bacteria for survival during adverse environmental conditions – germination results in leaving the dormant stage and once again becoming a typical, multiplying cell (vegetative cell)

The nuclear area

Plasmid
• Small circular, double stranded DNA. • Extrachromosomal genetic elements: – not connected to bacterial chromosome – replicate independently of chromosomal DNA - Do not contain genetic material essential for growth (limited).
• Single long circular molecule of double-stranded DNA (bacterial chromosome). • Bacterial chromosome do not include histones and are not surrounded by nuclear envelope.

Plasma membrane

Movement
Passive Processes

Osmosis

movement of water molecule from high to low concentration

Facilitated diffusion

needs a carrier proteins (transporters).

Simple diffusion

movement of molecules or ions from high to low concentration until equilibrium.

Active Processes

Group translocation

– molecules are chemically modified during passage across cytoplasmic membrane – energy is expended

Active transport

– substances are moved by transporter proteins from low to high concentration – cell has to expend energy for this to happen

Uptake of Nutrients
Microelements

– Mn, Zn, Co, Mo, Ni, and Cu – required in trace amounts – often supplied in water or in media components – ubiquitous in nature – serve as enzymes and cofactors

Macroelements

– C, O, H, N, S, P • found in organic molecules such as proteins, lipids, carbohydrates, and nucleic acids – K, Ca, Mg, and Fe • cations and serve in variety of roles including enzymes, biosynthesis – required in relatively large amounts

Destruction
Disinfectants – alcohols and quaternary ammonium compounds – Cause leakage of intracellular contents - plasmolysis: cells shrink – lysis: cells burst
1. Selectively permeable barrier 2. Synthesizes cell wall components 3. Assists in DNA replication 4. Carries on respiration 5. Captures energy as ATP
phospholipid bilayer with proteins embedded in and attached to the inner (intracellular) and outer (extracellular) surfaces

Glycocalyx

Slime layer
– disorganized and loosely attached
Capsules
– distinct and gelatinous – antiphagocytic – protect from dehydration
1.Protection from phygocytosis 2. Attachment to various surfaces 3. Source of nutrients 4. Protect a cell against dehydration.
substances that surround cell It is made inside the cell and excreted to the cell surface

Cell Wall

Archaea

A layer/2 of thick protein or glycoprotein outside plasma membrane

Pseudomurein (in methanogenes)

Some species have cell walls consisting of polysaccharide, glycoprotein, or protein but not peptidoglycan However, contain a substance similar to peptidoglycan called pseudopeptidoglycan (pseudomurein).
Bacteria
Gram Negative

periplasmic space – contains a high concentration of degrading enzymes – large number of transport proteins – (20-40%) of cell volume

peptidoglycan layer – 10% of cell wall – bonded to lipoproteins – located between outer membrane and the cytoplasmic membrane

Consist of one or very few layers of peptidoglycan (more susceptible to mechanical breakage). The peptidoglycan i s bonded to lipoprotein. Do not contain teichoic acids

Gram Positive

teichoic acid

Wall teichoic acid (link to the peptidoglycan layer).

Lipoteichoic acid (spans the peptidoglycan layer and is linked to the plasma membrane)

Periplasmic space lies between plasma membrane and cell wall and is smaller than that of Gramnegative bacteria

thick peptidoglycan layer – peptide amino acids cross linked – glycan sugar – 90% of the cell wall is peptidoglycan

Prevent bacterial cell from rupturing when the water pressure inside the cell is greater than that outside the cell Contributes to pathogenicity Classification Maintains characteristic shape provides a rigid platform (a point of anchorage)
Composition and characteristics
composed of a macromolecular network called peptidoglycan (also known as murein).

The disaccharide portion is made up of monosaccharides called N-acetylglucosamine (NAG) and N-acetylmuramic acid (NAM).

surrounds the cytoplasmic membrane not a regulatory structure like cytoplasmic membrane not selectively permeable

Axial filament

Pili
- Longer than fimbriae - Only one or two per cell - Pili joint bacterial cells in preparation for the transfer of DNA from one cell to another - Sometimes are also called sex pili.
Fimbriae
- can occur at the poles of the bacterial cell - can be evenly distributed over the entire surface of the cell - can number anywhere from a few to several hundred per cell
Bundles of fibrils that arise at the ends of the cell beneath the outer sheath
Used for attachment rather than for motility
Present in a spirochetes group of bacteria
spiral around the cell

Ribosomes

Several antibiotics work by inhibiting protein synthesis on prokaryotic ribosomes: – Streptomycin and gentamicin attach to the 30S subunit. – Erythromycin and chloramphenicol attach to the 50S subunit.
• Two subunit (small subunit-30S subunit and large subunit-50S subunit). S refer to Svedberg unit. • Each subunit consists of protein and RNA called ribosomal RNA or rRNA.
Function as the sites of protein synthesis

Inclusions

Gas vesicles
Found in photosynthetic group; • -cynobacteria • -proteobacteria • -green sulfur bacteria • -heterotropic bacteria • -archaea- Methanogen and halophiles
Function: provide buoyancy for aquatic prokaryotes- to receive sufficient amounts of oxygen, light and nutrients
• Hallow cylinders covered by protein • Membrane bounded • Collectively called gas vacuole
Magnetosomes
• Iron oxide (Fe3 O4) that act like magnets. • For downward movement until reaching suitable attachment site. • Function to protect the cell against hydrogen peroxide accumulation. • Aquaspirillum magnetotacticum (gram –ve bacteria).
Carboxysomes
• Contain the enzyme ribulose 1,5- diphosphate carboxylase. • Used for carbon dioxide fixation during photosynthesis. • Nitrifying bacteria, cyanobacteria and thiobacilli- used carbon dioxide as sole source of carbon.
Sulfur Granules
• Sulfur granules-serve as an energy reserve. • Derive energy by oxidising sulfur and sulfurcontaining compounds. • Thiobacillus - sulfur bacteria.
Lipid inclusions
• storage material -polymer poly-β- hydroxybutyric acid • revealed by Sudan dyes (fat-soluble) • Mycobacterium, Bacillus, Azotobacter, Spirillum
Polysaccharide granules
• consist of glycogen and starch. • differentiated by using iodine: -reddish brown indicates glycogen granules -blue indicates starch granules
Metachromatic granules
Corynebacterium diphtheriae. Also found in algae, fungi, protozoa (eukaryotic).
• Large inclusion. • Stain red with certain blue dyes such as methylene blue. • Collectively known as volutin (inorganic phosphate- polyphosphate used in the synthesis of ATP).
• Reserve deposits • Can serve as a basis of identification

Cytoplasm

Anammoxosome in Planctomycetes – organelle – site of anaerobic ammonia oxidation
Plasma membrane infoldings – observed in many photosynthetic bacteria – observed in many bacteria with high respiratory activity
Also contains proteins (enzymes), carbohydrates, lipids, inorganic ions and many low molecular weight compounds.
• Thick, aqueous, semitransparent and elastic. • The major structures in the prokaryotic cytoplasm are DNA, ribosomes and inclusions.

Flagella

Motility
Run or swim: moves in one direction for a length of time Tumbles: runs interrupted by periodic, abrupt, random changes in direction Swarm: rapid wavelike movement
Types of flagella
Monotrichous – one flagellum Polar flagellum – flagellum at end of cell Amphitrichous – one flagellum at each end of cell Lophotrichous – cluster of flagella at one or both ends Peritrichous – spread over entire surface of cell
Functions
– motility and swarming behavior – attachment to surfaces – may be virulence factors
Threadlike, locomotor appendages extending outward from plasma membrane and cell wall
Made of the protein flagellin and consists of a filament and basal region. The
Gram positive organisms have 2 rings, one in the cell wall and one in the cell membrane. Gram negative organisms have 4 rings, 2 in the cell wall and 2 in the cell membrane

What is Prokaryotes

Meaning
Most are unicellular, but a few prokaryotes
a group of organisms that lack a cell nucleus or any other membrane-bound organelles
Arrangement
Spiral

vibrio, spirillum and spirochetes

Bacilli

diplobacilli and streptobacilli

Cocci

- diplococci (s., diplococcus) – pairs – streptococci – chains – staphylococci – grape-like clusters – tetrads – 4 cocci in a square – sarcinae – cubic configuration of 8 cocci

Size
0.2 to 2.0 μm in diameter and 2 to 8 μm in length
Shape
Coccus, Bacillus, Spiral, Unusual, Pleomorphic, No fixed shape