Kategorier: Alla - databases - updates - articles - journals

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assignment 2 bioinfo

Nucleic Acids Research (NAR) is a highly influential journal in the fields of biology and medicine, recognized by the Special Libraries Association as one of the top 100 journals in the last century.

assignment 2 bioinfo

THE 2014 NAR DATABASE ISSUE AND AN UPDATED NAR ONLINE MOLECULAR BIOLOGY DATABASE COLLECTION

WHAT IS NAR?

ORGANISE THE ONLINE DATABASE MOSTLY IN BIOLOGICAL AND BIOINFORMATICS FIELD
HAS BEEN IDENTIFIED BY THE SPECIAL LIBRARIES ASSOCIATION (SLA) AS ONE OF THE TOP 100 MOST INFLUENTIAL JOURNALS IN BIOLOGY AND MEDICINE OVER THE LAST 100 YEARS
2014 DATABASE ISSUE
HIGHLIGTS ISSUES

ARTICLES ON BACTERIAL TAXONOMY AND METAGENOMIC

DEVELOPMENT OF THE SCOP DATABASE

UPDATE

NCBI'S MMDB DESCRIBES VAST+ (an improved tool for protein structure comparison)

STRUCTURAL DATABASES

NEW RNA BRICKS DATABASE, UPDATE ON PDBe, PDBsum, Arcdb, Genr3D, ModBase, Nucleic Acid Database AND iPfam

UPDATES ON DATABASES

CAZy, DATABASE OF GENOMIC VARIANTS, dbGaP, DRUGBANK, KEGG, miRBase, Pfam, REACTOME, SEED, TCDB, AND UniProt

DATABASES OF THE TRANSCRIPTION FACTOR BINDING SITES IN VARIOUS ORGANISM

REPORTS ON 181 DATABASES
NAR'S F1000 ARTICLES
THE FACULTY OF 1000 PROVIDES EVALUATION AND RATINGS OF HIGHLY SIGNIFICANT RESEARCH ARTICLES
NAR'S BREAKTROUGH ARTICLES
REPRESENT THE VERY BEST PAPERS IN TERMS OF

SCIENTIFIC EXCELLENCE

SIFNIFICANCE

ORIGINALITY

NAR'S TOP ARTICLES
SHOW RECENT ARTICLES

OFTEN ACCESS IN HTML AND PDF FORMATS IN SPECIFIED MONTH AND CTEGORY

UPDATED MONTHLY
CONTAIN LATEST RESTRICTION ENZYEM COLLECTION
AN OPEN ACCESS JOURNAL
NAR: NUCLEIC ACIDS RESEARCH

ASSIGNMENT 2 BIOCOMPUTATION AND BIOINFORMATICS DR SHAHIR BIN SHAMSIR

HOW ARE THE NAR DATABASE BEING ORGANIZE?

WHY DATABASE IS USEFUL TO DESCRIBE PROTEIN
PROTEIN STRUCTURE DATABASES FOR DEVELOPING THE COMPUTATIONAL METHODS USED AND IN PROVIDING A LARGE EXPERIMENTAL DATASET USED BY SOME METHODS TO PROVIDE INSIGHTS ABOUT THE FUNCTION OF A PROTEIN
CONTAIN SEQUENCE INFORMATION AND SOME DATABASES
TO ORGANIZE THE PROTEIN STRUCTURES 3D COORDINATES
DIFFERENT TYPE OF DATABASE AND DESCRIPTION
TOPPR

THE ONLINE PROTEIN PROCESSING RESOURCE

SynSysnet

SYNAPSE PROTEIN, THEIR STRUCTURE AND INTERACTIONS

SwissSideChain

NON-NATURAL AMINO ACID SIDE CHAIN FOR PROTEIN ENGINEERING

SPLICEOSOME DATABASE

SPLICEOSOME GENES AND PROTEINS, SPLICING COMPLEXES

PTMcode

FUNCTIONAL ASSOCIATIONS BETWEEN POSTTRANSLATIONAL MODIFICATIONS WITHIN PROTEIN

prePPI

PREDICTED AND EXPERIMENTALLY DETERMINDE PROTEIN-PROTEIN INTERACTIONS FOR YEAST AND HUMAN

Genome3D

DOMAIN STRUCTURE PREDICTIONS AND 3D MODELS FOR PROTEINS AND MODEL GENOME

ePros

ENERGY PROFILES OF PROTEIN STRUCTURE

EBI ENZYME PORTAL

VARIOUS KIND OF INFORMATION ABOUT ENZYMES: SMALL MOLECULE CHEMISTRY, BIOCHEMICAL PATHWAYS AND DRUG COMPOUNDS

D2P2

DATABASE OF DISORDERED PROTEIN PREDICTIONS

BioLip

BIOLOGICALLY RELEVANT LIGAND-PROTEIN INTERACTIONS

MAJOR CATEGORIES
GENOMIC VARIATION, DISEASE AND DRUGS
HUMAN GENOME, MODEL ORGANISMS, COMPARATIVE GENOMICS
VIRUSES, BACTERIA, PROTOZOA, AND FUNGI
METABOLIC AND SIGNALING PATHWAYS, ENZYMES, PROTEIN MODIFICATION
PROTEIN SEQUENCE AND STRUCTURE, MOTIFS AND DOMAINS, PROTEIN-PROTEIN INTERACTION
NUCLEIC ACID SEQUENCE AND STRUCTURE, TRANSCRIPTIONAL REGULATION

GROUP MEMBERS

NUR ILYANA BT ABD RASHID
NUR ANNISA BT SHAHADAN
NOR SYUHADAH BT MOHAMED NOR
NOR AKMASHATILLA BT CHE AB HAMID
NOR AZLIANA BT AZIZAN