NAR Database

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Summary on NAR database

av Audrey Lan

Lindemann - Macromolecules

av John Lindemann

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av Abdul Samoon - David Suzuki SS (2662)

Changes in Ecosystems By:Brian Baum

av Brian Baum

NAR Database

Why it is useful?

understanding high level function and utilities of biological system

for 3D prediction

provide data collection of enzyme

NextProt

provide variety types of imformation on human protein

to know the protein cluster

provide collection of protein from complete genome of prokaryote, plasmid, viruses, organelles, protozoa, and plant

provide DNA sequence

facilitate the detection of functional homologies

predict present of domain and important sign

usefull for functional analysis of protein sequence

have small collection of data for study supra molecular system

measured binding affinities

Description

Binding DB : Binding database

Interpro : Integrated resource of protein

Protein Cluster : Collection of related protein sequences consists of protein derieved from annotation of whole genomes, organelles and plasmids

SBASE : Domain prediction system

Gen Bank : Sequence databease, annotated collection of all available nucleotide sequences and their protein translations

NextProt : New human protein-centric knowledge platform

BRENDA : Comprehensive enzymes information system

KEGG : Database resource for understanding function and utilities of the biological system

PDB : Protein database

types of databse

PDB

enzyme and enzyme nomenclature

KEGG

BRENDA

Binding DB

nucleotide sequence database

International Nucleotude Sequence Database Collaoration

GenBank

nextProt

protein sequence motif and active site

protein domain database

SBASE

Protein Cluster

InterPro

how it is organize?

devided to 8 section

8

molecular biology database

7

plant database

6

diseases and drug

genomic variation

5

model organism

comparative genomics

human genome

4

protozoa and fungi

bacteria

viruses

3

protein modification

enzymes

metabolic and signaling pathway

2

protein-protein interaction

motive and domain

protein sequence and structure

1

transcriptional regulation

nucleic acid sequence and structure

annually update or revised

year 2014: 185 articles published

recent update: 123 databases

58 new molecular biology database