Nucleic Acid Research Database (NAR DATABASE)
Criteria for selection of NAR Database
Consists a semi-automated procedure which had set in motion and author had devised.
Consideration of so-called ‘boutique’ databases, covering relatively narrow topics
Data werehouses, portals, cross-platform search tools and visualization tools
Web-accessible databases that offer carefully curated data that are not available elsewhere
Extention with convenient search tools with easy to use visualization
The database has a large utility to scientific community
Wide scope and annually updated database
Free access database
Types of Databases Used and Why It Is Useful
InterPro
Database that consisit of protein families, domains and functional sites proteins can be applied to new protein sequences.
Database that consist of proteins sequences and analysis.
Database of enzyme information system representing one of the most comprehensive enzyme repositories
SWISS-MODEL Repository
a database of annotated 3-dimensional comparative proteins structure model generated by automated homology-modelling pipeline Swiss-model
Structural Classification of Proteins (SCOPe)
Contains proteins structural domains based on similarities of structures and amino acid sequences
Comprehensive description of proteins structural, proteins folds, superfamilies and families statistics.
Protein Data Bank (PDB)
Database that contains biomolecular structure and protein domain ( structural data of macromolecules)
3-Dimensional structural data of large biological molecules
NCBI Protein database
Sequences collections, contains proteins translation from annotated coding regions where has ability to determine bioogical structure and functions.
UniProt
Resources of protein sequences and contain large amount of biological functional information of proteins.
Number available
Description of database resources
US Department of Energy Joint Genome Institutes (JGI)
European Bioinfomatics Institute (EBI)
National Center for Biotechnology Information (NCBI)
The 21st annual Nucleic Acid Research Database issue include 185 articles
Updated descriptions of 23 database that had been previously describe in other journal
Updates of 100 database previously featured in NAR
58 new molecular biology databases
1552 online database sorted into 14 categories and 41 subcategories
Major grouping
Cell Biology
NCBI Bookshelf
Immunological Database
AntigenDB
The Immune Epitope Database (IEDB)
Plant Database
Other plants
ForestTreeDB
General plant databases
PPDB: Plant Proteomics Database
Organelle Database
Mitochondrial genes and proteins
HmtDB - Human Mitochondrial DataBase
Other molecular Database
Molecular probes and primers
Human OligoGenome Resource
Drugs and drug design
BSD - Biodegradative Strain Database
Microarray Data and Other Gene Expression Database
Stanford Microarray Database
Proteomic Database
Open Proteomics Database
Human Gene and Disease
Cancer gene databases
Network of Cancer Genes
General polymorphism databases
IPD - Immuno Polymorphism Database
General human genetics databases
GenAtlas
Human and Other Veterbrate Genome
Human ORFs
Human Proteinpedia
Human genome databases, maps and viewers
The UCSC Genome Browser database
Metabolic and Signalling Pathway
Signalling pathways
UCSD-Nature Signaling Gateway Molecule Pages
Protein-protein interactions
DDIB - Database of Domain Interactions and Binding
Metabolic pathways
KEGG - Kyoto Encyclopedia of Genes and Genomes
Enzymes and enzyme nomenclature
BRENDA
Genomic Database
Invertebrate genome databases
WorfDB - Worm ORF Database
General genomics databases
GtRDB - Genomic tRNA Database
Taxonomy and identification
NCBI Taxonomy
Genome annotation terms, ontologies and nomenclature
UniProtKB - Gene Ontology Annotation
SOURCE
Structure Database
Protein structure
DisProt - Database of Protein Disorder
Nucleic acid structure
NCIR - Non-Canonical Interactions in RNA
Carbohydrates
CSS - Carbohydrate Structure Suite
Protein Database
Databases of individual protein families
RPG - Ribosomal Protein Gene database
Protein domain databases; protein classification
3DSwap: Database of Proteins involved in 3D domain Swapping
Protein sequence motifs and active sites
ASC - Active Sequence Collection
Protein localization and targeting
eSLDB - eukaryotic Subcellular Localization database
Protein properties
BindingDB
General sequence databases
CharProtDB
RNA Sequence Database
European rRNA database
Nucleotide Sequence Database
Coding and non-coding DNA
EID: Exon-Intron Database
International Nucleotide Sequence Database Collaboration
MICdb - Database of Prokaryotic Microsatellites
